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Software Engineering Internship: Dynamic plugins as containerized (micro)services for life science applications.

Posted 24 Mar 2024
Work experience
0 to 1 years
Full-time / part-time
Full-time
Job function
Degree level
Required language
English (Fluent)

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WE AIM HIGH

You are curious, eager to learn, studying as software engineer, computer scientist or related field. You don’t mind a good discussion on the best solution and are continuously looking for the latest technology and features, all in the interest of the best results. You are a true team player and want to share your knowledge and learn from others.

YOUR ROLE

As a software engineering intern in our team, you will have a chance to work on exciting problems and technologies that can make an impact on a patient’s well-being. You will have the chance to apply Save what you learned in a real-life setting, as well as learn bleeding-edge technologies and platforms.

Starting date: Any time between October 2019 and February 2020

Good data stewardship is key to knowledge discovery and innovation. To generate value for a research community beyond the initial researchers, funding agencies are increasingly setting requirements for proper data stewardship of research data. Beyond proper collection, annotation, and archival, data stewardship includes the ‘long-term care’ of research data, with the goal that they can be found and re-used in downstream studies. To facilitate good data stewardship, a broad community of international stakeholders have developed the FAIR Data principles.

The high-throughput sequencing of immune repertoire, is increasingly applied in the development of tumor biomarkers and immunotherapeutics for cancers. As a relatively new field, most tools for the analysis and sharing of immunogenomic results do not follow FAIR data principles for good data stewardship.

During this internship you will have the chance to learn about FAIR data stewardship in the context of immunogenomics and Adaptive Immune Receptor repertoire (AIRR) sequencing experiments.

The internship will include the following activities:

  • Literature survey
  • Review of existing ontologies for immune repertoire sequencing data
  • Creation of an ontology for Adaptive Immune Receptor repertoire (AIRR) sequencing experiments
  • Construction of a FAIR data exporter for the analysis results of AIRR experiments

YOUR PROFILE

Required qualifications

  • Working towards a MSc. in Computer Science, Software Engineering or related disciplines

  • Familiarity with docker containers

  • Proficiency with an object-oriented programming language, preferably (but not necessarily) Python

Desirable experience

  • Familiarity with Service Oriented Architectures and microservices

ENPICOM is a young, dynamic and expanding biomedical software development company. We use computational biology to build solutions that truly matter and improve people’s lives and health.

IT
's-Hertogenbosch
25 employees